Diploma thesis

General information

• Denys Andrukhovskyi
• andrukhovskyi1 at uniba sk
• Supervisor: Luca Denti
• Consultant: Brona Brejova
• Theme: Pangenome graphs
  • Personalization

Selected papers

• Pangenome-based genome inference using integer programming https://doi.org/10.1101/gr.280567.125.
• Haplotype-resolved diploid genome inference on pangenome graphs https://doi.org/10.1101/2025.11.26.690754.
• Rapid, accurate long- and short-read mapping to large pangenome graphs with vg Giraffe https://doi.org/10.1101/2025.09.29.678807.

Selected conferences

• WABI conference https://www.wabi-conference.org/
• RECOMB conferece https://www.wabi-conference.org/